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Percorrer CIMO por Domínios Científicos e Tecnológicos (FOS) "Ciências Agrárias::Biotecnologia Agrária e Alimentar"
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- Adaptive genomic variation in honey bees from arid regionsPublication . Yadró Garcia, Carlos A.; Henriques, Dora; Haddad, N.; Obeidat, W. M.; AlShagour, B.; Muz, Mustafa Necati; Arab, A.; Eissa, A. A.; Hosri, C.; Lamghari, F.; Arruda, J.; Rufino, José; Martín Hernández, R.; Nanetti, A.; Pinto, M. AliceThe Middle East is home to a large number of Apis mellifera subspecies that have evolved under extreme aridity and desertic conditions. Therefore, they represent a unique opportunity to disentangle the genetic basis of adaptation to such challenging environmental conditions. We arranged a collection of 514 drone samples (haploid males) split into two latitudinal transects. Transect 1 comprised 342 samples: 66 A. m. lamarckii (Egypt), 197 A. m. syriaca (Jordan), 30 A. m. syriaca (Lebanon), 21 A. m. meda (southeastern Turkey), and 27 A. m. anatoliaca (Anatolia, Turkey). Transect 2 comprised 173 samples: 14 A. m. jemenitica (Oman), 9 A. m. jemenitica (UAE), 75 A. m. meda (Iran), and 75 A. m. caucasia (northeastern Turkey). For all samples, whole genomes were resequenced, and environmental and bioclimatic variables were retrieved from WorldClim. For each transect, we applied three genotype–environment association methods (Samβada, pRDA, and LFMM) and one outlier-detection approach (PCAdapt) to identify SNPs associated with environmental adaptation. SNPs were annotated, and the intersection of genes between the four methods in each transect was analysed for gene enrichment. In both transects, enriched terms included genes related to biological regulation through endocrine, neuroendocrine, and neurotransmitter pathways. The regulation of gene expression was also enriched, including several transcription factors, especially HOX genes. Transmembrane and ionic transporters also seem to play a central role in environmental adaptation in these subspecies. Finally, neurogenesis, synapse establishment, and neural system development were also enriched. When gene enrichment analysis was set to exclude electronic annotations (automatically assigned, non-curated GO terms), enriched terms included processes such as behaviour, learning or memory, cognition, and associative and olfactory learning and behaviour. Our findings point to a complex suite of regulatory and sensory 62 pathways that collectively shape the environmental adaptation of honey bee subspecies that have evolved in arid environments.
- Advancing Pickering emulsions with natural-based solid dispersion particles: Particle screening and design of pectin-based emulsionsPublication . Rezende, Stephany; Santamaria-Echart, Arantzazu; Ribeiro, Andreia; Dias, Madalena M.; Barreiro, FilomenaGiven the evolving trends in consumption, Pickering emulsions are emerging as a promising solution for functional and healthier foods, highlighting the need to diversify particle stabilisers. This study assessed the potential of curcumin-based solid dispersions (SDs) prepared with natural polymers (pectin, maltodextrin, Arabic gum, potato starch, and k-carrageenan) as Pickering stabilisers. Among these, pectin-curcumin SDs (contact angle = 48.0 ± 3.6◦) demonstrated effective emulsion stabilisation, as confirmed by confocal microscopy. The impact of oil volume fraction (φ = 0.20–0.70) and SD concentration (1.0–5.0 % wt.) on emulsion stability was evaluated. An intermediate φ (0.45) consistently minimised creaming index (CI = 0–16.67 %) and droplet size (D[4,3] =2.53–4.12 μm). Complete reduction of creaming (CI = 0 %) was achieved at high SD concentration with low φ or low SD concentration with high φ, leading to improved stability. The three produced optimised formulations exhibited distinct colour properties (L* = 64.06–72.00, a* = 11.09–12.50, b* = 55.10–60.70), with hues ranging from yellow to orange, highlighting their potential for natural colouring applications. Rheological behaviour varied from gel-like (G’ > G”) to viscoelastic (G’ = G”), broadening their potential in food formulations. Higher SD concentrations with lower/intermediate φ produced structured, gel-like emulsions suitable for sauces or spreads. In contrast, lower SD concentrations with higher φ yielded fluid emulsions for dressings or beverages. These findings highlight the feasibility of SD-based Pickering emulsions for designing stable (≥30 days), visually appealing, and texturally versatile food products.
- Antioxidant Properties and Microbiological Stability of Yogurt Enriched with Elderberry ExtractPublication . Pascariu, Oana-Elena; Estevinho, Letícia M.; Seixas, Natália; Dopcea, Ioan; Boiu-Sicuia, Oana A.; Geicu-Cristea, Mihaela; Israel-Roming, FlorentinaThis study examines the impact of added elderberry (EDB) extract on the physico-chemical, microbiological, and sensory properties of yogurt over a 21-day storage period. Two separate experiments were conducted: the first focused on testing concentrations of 0.05%, 0.1%, 0.2%, and 0.5% (w/w) EDB extract for impoving antioxidant properties and replacing potassium sorbate, a chemical preservative commonly used in dairy products, while the second aimed to enhance the bioactive compounds’ concentration by adding 0.5% EDB extract, and to assess the effect of a sweetener (agave syrup) on the sensory profile. Both experimental approaches demonstrated a significant increase (p < 0.01) in total phenolic content. In the first experiment, there was approximately 2.6 times more total phenolic content compared to the control (with a maximum of 11.71 mg GAE/100 g for the sample with 0.2% EDB extract), and about 6 times more with the addition of 0.5% EDB extract and agave syrup (with a maximum of 25.29 mg GAE/100 g). Additionally, the IC50 value decreased for all samples with EDB extract, suggesting enhanced antioxidant activity. Specifically, the antioxidant activity was approximately 3.3 times higher for the control for samples obtained from homemade yogurt with EDB extract, and about 8 times higher for samples obtained by adding EDB extract to commercial yogurt, compared to their respective controls. The high stability of bioactive compounds during the storage period highlights the potential of EDB extract as a functional antioxidant ingredient. Microbiological analysis confirmed the safety of the yogurt, with lactic acid and mesophilic bacteria showing stable counts and minimal declines over time. In the first experiment, a reduction of about 2.3 CFU/g was observed from day 0 to day 21 in samples with 0.1% and 0.2% EDB extract, while the control sample showed a reduction of 1.84 CFU/g. However, the control sample recorded the growth of psychrophilic bacteria, yeasts, and molds. In the second experiment, the samples with 0.5% EDB extract showed an average reduction of approximately 0.35 CFU/g, while the control showed a reduction of 0.51 CFU/g, maintaining stable counts and no detectable growth of psychrophilic bacteria, yeasts, molds, or coliforms. Additionally, the inclusion of different concentrations of EDB extract, along with the combination of a higher concentration of EDB extract and agave syrup, improved the yogurt’s sensory attributes, thereby enhancing consumer acceptance. For the first experiment, 68% of the panelists expressed their preference for the samples with EDB extract, and 10% preferred the control sample. In the second experiment, 49% preferred the sample with 0.5% EDB extract and agave syrup, while 23% preferred the control sample. These findings support the integration of EDB extract into yogurt formulations to boost antioxidant properties while preserving microbiological stability. Future research should explore the potential health benefits and long-term effects of these functional dairy products.
- Application of a lab-made electronic nose as a tool to assess extra virgin olive oil sensory categoryPublication . Ferreiro, Nuno Manuel; Veloso, Ana C.A.; Rodrigues, Nuno; Pereira, José Alberto; Peres, António M.Olive oils assessed by a sensory panel in a national contest and split according to the perceived intensity of the fruitness, green delicate, green medium and green.
- Application of a lab-made electronic nose as a tool to assess extra virgin olive oil sensory categoryPublication . Ferreiro, Nuno Manuel; Veloso, Ana C.A.; Rodrigues, Nuno; Pereira, José Alberto; Peres, António M.Premium extra virgin olive oils are usually subjected to national and international contests aiming to promote their competitiveness and internationalization capacity. Olive oils were assessed by a sensory expert panel and initially split according to the perceived intensity of the fruitiness sensation into four categories, namely ripe (RF), green delicate (GD), green medium (GM), and green robust (GR) fruitiness.1 However, even for trained panelists, the assessment comprises a subjectivity degree, and the number of oils that can be evaluated per day is limited. In this sense, the use of electronic sensing devices can be helpful as pre-assessment tools, which may allow reducing the initial number of oils to be evaluated. Thus, a lab-made electronic nose (E-nose) comprising nine commercial metal oxide semiconductor (MOS) sensors, previously developed by the research team,2 was applied (Figure 1) aiming to verify its suitability for this purpose. In total, 59 olive oils were included in this study, which were previously classified by an expert sensory panel in a national contest: 20 oils as RF, 15 as GD, 17 as GM and 7 as GR fruitiness. For the E-nose analysis, 0.5 mL of each olive oil was inserted into a 25 mL glass vial and placed in the sampling chamber at 28 ºC (temperature recommended by the International Olive Council for sensory analysis of olive oils) for 13-min, allowing to generate a volatile fraction representative of the sample. After a cleaning step of the sensors’ surfaces using an air flow, the gas headspace from each sample was directed into the detection chamber, where it interacted with the MOS sensors for 2.5 min. The resistance signals of each of the nine MOS sensors were recorded by a data logger at 4 sec intervals being then treated taking into account seven distinct feature extraction methods: the last response point (LP), the integral of the response curve (INT), the maximum response point (MAX), the minimum response point (MIN), the sum of the response curve (SUM), and the mean of the response curve (MEAN).3 The results showed that the E-nose feature extracted data could be used to satisfactorily discriminate, based on a linear discriminant analysis (LDA) coupled with a simulated annealing (SA) algorithm, the olive oils according to sensory category groups with a sensitivity of 100% for training (Figure 2a) and 73% for the leave-one-out cross-validation (LOO-CV) procedure. The lower sensitivity achieved for the internal validation was mainly due to misclassification between GD and GM. Indeed, the classification performance of the E-nose-LDA-SA could be enhanced if only three groups were considered: RF, GD+GM and GI fruitiness. In this case the E-nose could correctly classify 100% of the oils for training (Figure 2b) and 92% for LOO-CV. In conclusion, the E-nose could be effectively applied as a rapid, cost-effective, and non-invasive tool for olive oil sensory classification.
- Application of encapsulated tomato by-product extract as a colorant in mascarponePublication . Molina, Adriana K.; Leichtweis, Maria Gabriela; Machado, Manuela; Silva, Sara; Pintado, Manuela; Barreira, João C.M.; Dias, Maria Inês; Prieto Lage, Miguel A.; Barros, Lillian; Pereira, CarlaAgricultural by-products, often underutilized, represent a significant opportunity to obtain sustainable value-added products to develop new functional foods. In this context, the (typically discarded) aerial parts of tomato plants (Solanum lycopersicum L. var. cerasiforme), were studied as new sources of natural bioactive compounds, focusing the extraction and encapsulation (using spray drying with maltodextrin as the encapsulant) of chlorophylls. The encapsulated natural colorant was subsequently incorporated into mascarpone cheese to assess its stability and effect on nutritional and antioxidant properties. The obtained extracts were mainly characterized by high concentrations of bioactive compounds, particularly quercetin-3-O-deoxyhexoside (14.4 ± 0.3 mg/g). The colorant imparted a greener hue to the mascarpone (a* –6.0 ± 0.05 vs. –1.7 ± 0.05 in control, p < 0.001) and maintained antioxidant activity (OxHLIA EC₅₀ = 1440 ± 72 to 1166 ± 66 μg/mL, p = 0.030) without altering the nutritional profile (p > 0.05). Moreover, no cytotoxicity was observed, and the fatty acid composition remained unchanged. Accordingly, the studied encapsulated colorant might be used as a functional ingredient in other dairy products, imparting an attractive color while preserving nutritional integrity. In conclusion, the incorporation of TAPC is an effective strategy to enrich dairy products with natural pigments and bioactive compounds without compromising quality. Future research is needed to explore its application in other food matrices and assess long-term storage effects.
- Assessing pesticide impact on honeybee gut microbiota: a call for microbial diversity as an environmental risk assessment endpointPublication . Rosa-Fontana, Annelise; Aguado, Daniel; Martín Hernández, Raquel; Higes, Mariano; Henriques, Dora; Pinto, M. AliceA recent roadmap for integrating environmental microbiota into risk assessments under the European Food Safety Authority (EFSA) remit has been published. The honeybee gut microbiota has emerged as a promising avenue to protect bees against stressors. Honeybees exhibit a stable core microbiota, and dysbiosis may serve as an indicator of adverse conditions. We investigated the gut microbiota of newly emerged “Apis mellifera iberiensis” workers exposed to a single concentration of the insecticide flupyradifurone (FPF, 36 ppm). The control groups included pure syrup (negative control, NC) and syrup supplemented with 1% acetone (acetone control, AC). Laboratory trials followed official guidelines (OECD No. 245). The abdomen of each bee was separated from the thorax, and DNA extraction was performed individually. Full-length 16s rRNA amplicon metagenomic was sequenced through PacBio sequel II (HiFi/CCS mode). The Shannon diversity index was used to analyze honeybee gut microbiota composition across experimental groups. Our results revealed a significant increase in bacterial community diversity (Shannon index, P = 0.003) after ten days of chronic exposure to FPF. This effect was more pronounced when compared to the AC group (P = 0.003) than to the NC group (P = 0.03). These findings demonstrate that FPF disrupts the honeybee gut microbiota. This study represents the first characterization of honeybee gut microbiota strictly adhering to OECD guidelines without modifications or adaptations. Furthermore, we have provided new insights into pesticide risk assessment, highlighting an overlooked aspect of bee health assessment. We propose integrating this approach into pesticide risk assessments by using diversity indices as comparative parameters. Specifically, we advocate for the inclusion of honeybee gut microbiota dysbiosis as a sublethal effect in the initial screening phase of risk assessments (laboratory-based assays) and as a key parameter for evaluating pollinator health.
- Assessing the prebiotic potential of xylooligosaccharides produced by one-step fermentation using agro-residuePublication . Cordeiro, Ana; Fernandes, Andreia; Sousa, Joana; Cardoso, Beatriz; Alves, Joana; Silvério, Sara; Peres, António M.; Rodrigues, Lígia R.; Amorim, CláudiaA prebiotic is defined as a substrate that is selectively utilized by host microrganisms, conferring a health benefit
- Assessing the prebiotic potential of xylooligosaccharides produced by one-step fermentation using agro-residuesPublication . Cordeiro, Ana; Fernandes, Andreia; Sousa, Joana; Cardoso, Beatriz; Alves, Joana; Silvério, Sara; Peres, António M.; Rodrigues, Lígia R.; Amorim, CláudiaThe prebiotic effect is a fundamental concept in the fields of nutrition and gut health, referring to the beneficial effects of specific non-digestible dietary components on the gut microbiota, including xylooligosaccharides (XOS). These compounds function as food sources for beneficial gut bacteria, fostering their growth and activity. In this work, in vitro studies were performed to evaluate the prebiotic potential of XOS produced from olive stones (OS) and coffee silver skin (CSS) via a one step fermentation using a recombinant Bacillus subtilis 3610 harbouring the xylanase gene xyn2 from Trichoderma reesei. This potential was compared with a commercially available prebiotic oligofructose (Orafti®, BENEO, Germany). A mixture of human faeces from four healthy donors aged between 24 and 28 years old was used as inoculum. The pH variation and the production of short-chain fatty acids (SCFAs), gases, and ammonia were analysed during the 48 hours fermentations. The prebiotic supplementation resulted in a reduction of the pH value over time, with oligofructose presenting the most significant pH drop at 48 hours (ΔpH=3.65). The addition of prebiotics also significantly increased the production of beneficial SCFAs, with oligofrutose exhibiting a notable increase in the production of lactic and acetic acid production after 48 hours (28.0±0.1 and 28±1 mM, respectively), while OS-XOS and CSS-XOS demonstrated a more prominent rise towards the production of acetic acid (14.8±0.4 and 20.4±0.1 mM, respectively), butyric acid (2.5±0.3 and 3.29±0.04 mM, respectively), and valeric acid (75±1 and 110±14 mM, respectively) at 48 hours. Remarkably, the gas analysis revealed that the addition of OS/CSS-XOS fully suppressed the production of CH4 and increased the CO2 generation after 48 hours (2.6±0.7 and 5.20±0.05 mmol.L-1medium, respectively). These findings strongly suggest that the XOS produced from OS and CSS holds potential prebiotic properties for human health.
- Assessing the Shelf-Life of Olive Oil Under Different Storage Conditions: A Review of Predictive ModelsPublication . Ferreiro, Nuno Manuel; Veloso, Ana C.A.; Pereira, José Alberto; Rodrigues, Nuno; Peres, António M.Olive oil holds a significant position in the global vegetable oil market, often reaching high prices compared to other vegetable oils. However, like other oils, it is vulnerable to oxidation, which can degrade its quality during storage, making it essential to determine its shelf-life. So, kinetic or empirical models have been developed to estimate how long olive oil can maintain the legal quality standards necessary for its commercial classification or to be marketed with nutritional or health claim. This study reviews recent advancements in modelling approaches to predict the shelf-life of olive oil under different storage conditions, namely storage duration (from 2 months to 2 years), temperature (20–50 ºC), and light exposure (light versus dark storage). Most models estimate the timeframe in which olive oil remains compliant with regulatory requirements for specific commercial grades, namely extra virgin olive oil, with fewer models addressing health-related claims. Developed models include pseudo zero-, pseudo first-, and pseudo second-order kinetic models and empirical models, derived from experimental data on the oil’s chemical stability over time. While empirical models can be highly accurate, they often require extensive chemical data, including for compounds for which no legal thresholds exist, and complex statistical techniques, limiting their use by non-specialists. In contrast, kinetic models offer simpler and user-friendly mathematical equations. Nonetheless, olive oil’s shelf-life predictions remain influenced by factors such as initial oil composition, packaging materials, and storage conditions, underscoring the ongoing need to refine the predictive models.