Publication
Discovery of biomedical databases through semantic questioning
| dc.contributor.author | Pereira, Arnaldo | |
| dc.contributor.author | Almeida, João Rafael | |
| dc.contributor.author | Lopes, Rui Pedro | |
| dc.contributor.author | Pazos, Alejandro | |
| dc.contributor.author | Oliveira, José Luís | |
| dc.date.accessioned | 2024-01-17T16:06:26Z | |
| dc.date.available | 2024-01-17T16:06:26Z | |
| dc.date.issued | 2022 | |
| dc.description.abstract | Many clinical studies are greatly dependent on an efficient identification of relevant datasets. This selection can be performed in existing health data catalogues, by searching for available metadata. The search process can be optimised through questioning-answering interfaces, to help researchers explore the available data present. However, when searching the distinct catalogues the lack of metadata harmonisation imposes a few bottlenecks. This paper presents a methodology to allow semantic search over several biomedical database catalogues, by extracting the information using a shared domain knowledge. The resulting pipeline allows the converted data to be published as FAIR endpoints, and it provides an end-user interface that accepts natural language questions. | pt_PT |
| dc.description.sponsorship | This work has received support from the EU/EFPIA Innovative Medicines Initiative 2 Joint Undertaking under grant agreement No 806968. AP and JRA are funded by the FCT - Foundation for Science and Technology (national funds) under the grants PD/BD/142877/2018 and SFRH/BD/147837/2019 respectively. | pt_PT |
| dc.description.version | info:eu-repo/semantics/publishedVersion | pt_PT |
| dc.identifier.citation | Pereira, Arnaldo; Almeida, João Rafael; Lopes, Rui Pedro; Pazos, Alejandro; Oliveira, José Luís (2022). Discovery of biomedical databases through semantic questioning. In 32nd Medical Informatics Europe Conference (MIE). 294, p. 585-586. ISBN 978-1-6436-8284-6 | pt_PT |
| dc.identifier.doi | 10.3233/SHTI220535 | pt_PT |
| dc.identifier.isbn | 978-1-6436-8284-6 | |
| dc.identifier.uri | http://hdl.handle.net/10198/29253 | |
| dc.language.iso | eng | pt_PT |
| dc.peerreviewed | yes | pt_PT |
| dc.publisher | IOS Press | pt_PT |
| dc.relation | European Health Data and Evidence Network | |
| dc.relation | Queryng and Visualization of Semantic Data | |
| dc.relation | Enriching information extraction pipelines in standardised health databases | |
| dc.rights.uri | http://creativecommons.org/licenses/by/4.0/ | pt_PT |
| dc.subject | Clinical studies | pt_PT |
| dc.subject | Health data | pt_PT |
| dc.subject | Ontology | pt_PT |
| dc.subject | Semantic questioning | pt_PT |
| dc.title | Discovery of biomedical databases through semantic questioning | pt_PT |
| dc.type | conference paper | |
| dspace.entity.type | Publication | |
| oaire.awardTitle | European Health Data and Evidence Network | |
| oaire.awardTitle | Queryng and Visualization of Semantic Data | |
| oaire.awardTitle | Enriching information extraction pipelines in standardised health databases | |
| oaire.awardURI | info:eu-repo/grantAgreement/EC/H2020/806968/EU | |
| oaire.awardURI | info:eu-repo/grantAgreement/FCT/POR_CENTRO/PD%2FBD%2F142877%2F2018/PT | |
| oaire.awardURI | info:eu-repo/grantAgreement/FCT/OE/SFRH%2FBD%2F147837%2F2019/PT | |
| oaire.citation.endPage | 586 | pt_PT |
| oaire.citation.startPage | 585 | pt_PT |
| oaire.citation.title | 32nd Medical Informatics Europe Conference (MIE) | pt_PT |
| oaire.citation.volume | 294 | pt_PT |
| oaire.fundingStream | H2020 | |
| oaire.fundingStream | POR_CENTRO | |
| oaire.fundingStream | OE | |
| person.familyName | Lopes | |
| person.givenName | Rui Pedro | |
| person.identifier.ciencia-id | 8E14-54E4-4DB5 | |
| person.identifier.orcid | 0000-0002-9170-5078 | |
| project.funder.identifier | http://doi.org/10.13039/501100008530 | |
| project.funder.identifier | http://doi.org/10.13039/501100001871 | |
| project.funder.identifier | http://doi.org/10.13039/501100001871 | |
| project.funder.name | European Commission | |
| project.funder.name | Fundação para a Ciência e a Tecnologia | |
| project.funder.name | Fundação para a Ciência e a Tecnologia | |
| rcaap.rights | openAccess | pt_PT |
| rcaap.type | conferenceObject | pt_PT |
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