Aerial high-resolution imagery to assess almond orchard conditions

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Publications

Almond orchard management using multi-temporal UAV data: a proof of concept

Publication . Guimaraes, Nathalie; Padua, Luis; Sousa, Joaquim J.; Bento, Albino; Couto, Pedro

In the last decade Unmanned Aerial Systems (UAS) have become a reference tool for agriculture applications. The integration of multispectral sensors that can capture near infrared (NIR) and red edge spectral reflectance allows the creation of vegetation indices, which are fundamental for crop monitoring process. In this study, we propose a methodology to analyze the vegetative state of almond crops using multi-temporal data acquired by a multispectral sensor accoupled to an Unmanned Aerial Vehicle (UAV). The methodology implemented allowed individual tree parameters extraction, such as number of trees, tree height, and tree crown area. This also allowed the acquisition of Normalized Difference Vegetation Index (NDVI) information for each tree. The multitemporal data showed significant variations in the vegetative state of almond crops.

2022Conference object

Open access

Combining UAV-Based Multispectral and Thermal Infrared Data with Regression Modeling and SHAP Analysis for Predicting Stomatal Conductance in Almond Orchards

Publication . Guimarães, Nathalie; Sousa, Joaquim J.; Couto, Pedro; Bento, Albino; Pádua, Luís

Understanding and accurately predicting stomatal conductance in almond orchards is critical for effective water-management strategies, especially under challenging climatic conditions. In this study, machine-learning (ML) regression models trained on multispectral (MSP) and thermal infrared (TIR) data acquired from unmanned aerial vehicles (UAVs) are used to address this challenge. Through an analysis of spectral indices calculated from UAV-based data and feature-selection methods, this study investigates the predictive performance of three ML models (extra trees, ET; stochastic gradient descent, SGD; and extreme gradient boosting, XGBoost) in predicting stomatal conductance. The results show that the XGBoost model trained with both MSP and TIR data had the best performance (R2 = 0.87) and highlight the importance of integrating surface-temperature information in addition to other spectral indices to improve prediction accuracy, up to 11% more when compared to the use of only MSP data. Key features, such as the green–red vegetation index, chlorophyll red-edge index, and the ratio between canopy temperature and air temperature (Tc-Ta), prove to be relevant features for model performance and highlight their importance for the assessment of water stress dynamics. Furthermore, the implementation of Shapley additive explanations (SHAP) values facilitates the interpretation of model decisions and provides valuable insights into the contributions of the features. This study contributes to the advancement of precision agriculture by providing a novel approach for stomatal conductance prediction in almond orchards, supporting efforts towards sustainable water management in changing environmental conditions.

2024Journal article

Open access

Identification of aphids using machine learning classifiers on UAV-based multispectral data

Publication . Guimarães, Nathalie; Pádua, Luís; Sousa, Joaquim J.; Bento, Albino; Couto, Pedro

Almond trees in Portugal are susceptible to aphid infestation, which can result in reduced fruit production. To effectively tackle this issue, the combination of remote sensing (RS) data and machine learning (ML) classifiers can be used to accurately detect the presence of aphids. This study focuses in the implementation of ML classifiers and RS data analysis to identify aphids on almond trees, using high-resolution multispectral data collected through an unmanned aerial vehicle (UAV) in a Portuguese almond orchard. Four ML classifiers, kNN, SVM, RF and XGBoost, were employed and fine-tuned using vegetation indices derived from spectral data. The results revealed that the SVM classifier achieved an overall accuracy (OA) of 77%, followed by kNN with an OA of 74%, while XGBoost and RF achieved OAs of 71% and 69%, respectively. Consequently, this study demonstrates the viability of employing RS data and ML classifiers for aphid identification in almond orchards.

2023Conference object

Open access

Remote Sensing Applications in Almond Orchards: A Comprehensive Systematic Review of Current Insights, Research Gaps, and Future Prospects

Publication . Guimarães, Nathalie; Sousa, Joaquim J.; Pádua, Luís; Bento, Albino; Couto, Pedro

Almond cultivation is of great socio-economic importance worldwide. With the demand for almonds steadily increasing due to their nutritional value and versatility, optimizing the management of almond orchards becomes crucial to promote sustainable agriculture and ensure food security. The present systematic literature review, conducted according to the PRISMA protocol, is devoted to the applications of remote sensing technologies in almond orchards, a relatively new field of research. The study includes 82 articles published between 2010 and 2023 and provides insights into the predominant remote sensing applications, geographical distribution, and platforms and sensors used. The analysis shows that water management has a pivotal focus regarding the remote sensing application of almond crops, with 34 studies dedicated to this subject. This is followed by image classification, which was covered in 14 studies. Other applications studied include tree segmentation and parameter extraction, health monitoring and disease detection, and other types of applications. Geographically, the United States of America (USA), Australia and Spain, the top 3 world almond producers, are also the countries with the most contributions, spanning all the applications covered in the review. Other studies come from Portugal, Iran, Ecuador, Israel, Turkey, Romania, Greece, and Egypt. The USA and Spain lead water management studies, accounting for 23% and 13% of the total, respectively. As far as remote sensing platforms are concerned, satellites are the most widespread, accounting for 46% of the studies analyzed. Unmanned aerial vehicles follow as the second most used platform with 32% of studies, while manned aerial vehicle platforms are the least common with 22%. This up-to-date snapshot of remote sensing applications in almond orchards provides valuable insights for researchers and practitioners, identifying knowledge gaps that may guide future studies and contribute to the sustainability and optimization of almond crop management.

2024Journal article

Open access

Comparative Evaluation of Remote Sensing Platforms for Almond Yield Prediction

Publication . Guimarães, Nathalie; Fraga, Helder; Sousa, Joaquim J.; Pádua, Luís; Bento, Albino; Couto, Pedro

Almonds are becoming a central element in the gastronomic and food industry worldwide. Over the last few years, almond production has increased globally. Portugal has become the third most important producer in Europe, where this increasing trend is particularly evident. However, the susceptibility of almond trees to changing climatic conditions presents substantial risks, encompassing yield reduction and quality deterioration. Hence, yield forecasts become crucial for mitigating potential losses and aiding decisionmakers within the agri-food sector. Recent technological advancements and new data analysis techniques have led to the development of more suitable methods to model crop yields. Herein, an innovative approach to predict almond yields in the Tras-os-Montes region of Portugal was developed, by using machine learning regression models (i.e., the random forest regressor, XGBRegressor, gradient boosting regressor, bagging regressor, and AdaBoost regressor), coupled with remote sensing data obtained from different satellite platforms. Satellite data from both proprietary and free platforms at different spatial resolutions were used as features in the study (i.e., the GSMP: 11.13 km, Terra: 1 km, Landsat 8: 30 m, Sentinel-2: 10 m, and PlanetScope: 3 m). The best possible combination of features was analyzed and hyperparameter tuning was applied to enhance the prediction accuracy. Our results suggest that high-resolution data (PlanetScope) combined with irrigation information, vegetation indices, and climate data significantly improves almond yield prediction. The XGBRegressor model performed best when using PlanetScope data, reaching a coefficient of determination (R2) of 0.80. However, alternative options using freely available data with lower spatial resolution, such as GSMaP and Terra MODIS LST, also showed satisfactory performance (R2 = 0.68). This study highlights the potential of integrating machine learning models and remote sensing data for accurate crop yield prediction, providing valuable insights for informed decision support in the almond sector, contributing to the resilience and sustainability of this crop in the face of evolving climate dynamics.

2024Journal article

Open access