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The gill transcriptome of threatened European freshwater mussels

2022Journal article Open access
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dc.contributor.authorGomes-dos-Santos, André
dc.contributor.authorMachado, André M.
dc.contributor.authorCastro, L. Filipe C.
dc.contributor.authorPrié, Vincent
dc.contributor.authorTeixeira, Amílcar
dc.contributor.authorLopes-Lima, Manuel
dc.contributor.authorFroufe, Elsa
dc.date.accessioned2023-02-16T17:07:56Z
dc.date.available2023-02-16T17:07:56Z
dc.date.issued2022
dc.description.abstractGenomic tools applied to non-model organisms are critical to design successful conservation strategies of particularly threatened groups. Freshwater mussels of the Unionida order are among the most vulnerable taxa and yet almost no genetic resources are available. Here, we present the gill transcriptomes of five European freshwater mussels with high conservation concern: Margaritifera margaritifera, Unio crassus, Unio pictorum, Unio mancus and Unio delphinus. The final assemblies, with N50 values ranging from 1069–1895 bp and total BUSCO scores above 90% (Eukaryote and Metazoan databases), were structurally and functionally annotated, and made available. The transcriptomes here produced represent a valuable resource for future studies on these species’ biology and ultimately guide their conservation.pt_PT
dc.description.sponsorshipAGS was funded by the Portuguese Foundation for Science and Technology (FCT) under the grant SFRH/ BD/137935/2018, that also supported MLL (2020.03608.CEECIND) and EF (CEECIND/00627/2017). This research was developed under the project EdgeOmics - Freshwater Bivalves at the edge: Adaptation genomics under climate-change scenarios (PTDC/CTA-AMB/3065/2020) funded by FCT through national funds. Additional strategic funding was provided by FCT UIDB/04423/2020 and UIDP/04423/2020.pt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.citationGomes-dos-Santos, André; Machado, André M.; Castro, L. Filipe C.; Prié, Vincent; Teixeira, Amílcar; Lopes-Lima, Manuel; Froufe, Elsa (2022). The gill transcriptome of threatened European freshwater mussels. Scientific Data. eISSN 2052-4463. 9:1, p. 1-10pt_PT
dc.identifier.doi10.1038/s41597-022-01613-xpt_PT
dc.identifier.eissn2052-4463
dc.identifier.urihttp://hdl.handle.net/10198/27017
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherSpringer Naturept_PT
dc.relationInferring phylogeny, demography and adaptive evolution in Margaritiferidae from High-throughput Sequencing data
dc.relationNot Available
dc.relationInterdisciplinary Centre of Marine and Environmental Research
dc.relationInterdisciplinary Centre of Marine and Environmental Research
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/pt_PT
dc.subjectAnimalspt_PT
dc.subjectBivalviapt_PT
dc.subjectFresh waterpt_PT
dc.subjectGenomicspt_PT
dc.subjectGillspt_PT
dc.subjectTranscriptomept_PT
dc.titleThe gill transcriptome of threatened European freshwater musselspt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.awardTitleInferring phylogeny, demography and adaptive evolution in Margaritiferidae from High-throughput Sequencing data
oaire.awardTitleNot Available
oaire.awardTitleInterdisciplinary Centre of Marine and Environmental Research
oaire.awardTitleInterdisciplinary Centre of Marine and Environmental Research
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/POR_NORTE/SFRH%2FBD%2F137935%2F2018/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/CEEC IND 2017/CEECIND%2F00627%2F2017%2FCP1420%2FCT0002/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/3599-PPCDT/PTDC%2FCTA-AMB%2F3065%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F04423%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDP%2F04423%2F2020/PT
oaire.citation.issue1pt_PT
oaire.citation.titleScientific Datapt_PT
oaire.citation.volume9pt_PT
oaire.fundingStreamPOR_NORTE
oaire.fundingStreamCEEC IND 2017
oaire.fundingStream3599-PPCDT
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStream6817 - DCRRNI ID
person.familyNameTeixeira
person.givenNameAmilcar
person.identifier2153193
person.identifier.ciencia-id9510-3CF3-0393
person.identifier.orcid0000-0001-5336-1174
person.identifier.scopus-author-id7202385393
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsopenAccesspt_PT
rcaap.typearticlept_PT
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