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DC: a highly efficient and flexible exact pattern-matching algorithm

dc.contributor.authorDeusdado, Sérgio
dc.contributor.authorCarvalho, Paulo
dc.date.accessioned2011-05-20T13:07:33Z
dc.date.available2011-05-20T13:07:33Z
dc.date.issued2009
dc.description.abstractware of the need for faster and flexible searching algorithms in fields such as web searching or bioinformatics, we propose DC - a high-performance algorithm for exact pattern matching. Emphasizing the analysis of pattern peculiarities in the pre-processing phase, the algorithm en- compasses a novel search logic based on the examination of multiple alignments within a larger window, selectively tested after a powerful heuristic called compatibility rule is verified. The new algorithm’s performance is, on average, above its best-rated competitors when testing different data types and using a complete suite of pattern extensions and compositions. The flexibility is remarkable and the efficiency is more relevant in quaternary or greater alphabets. Keywords: exact pattern-match, searching algorithms.por
dc.identifier.citationDeusdado, Sérgio; Carvalho, Paulo (2009). DC: a highly efficient and flexible exact pattern-matching algorithm. Braga: Universidade do Minho. TechReport;DI-CCTC-09-10por
dc.identifier.urihttp://hdl.handle.net/10198/4428
dc.language.isoengpor
dc.peerreviewednopor
dc.publisherCentro de Ciências e Tecnologias da Computação - Universidade do Minhopor
dc.relation.ispartofseriesTechReport;DI-CCTC-09-10
dc.relation.publisherversionhttp://cctc.uminho.pt/publications/pub-2009-018por
dc.subjectExact pattern-matchingpor
dc.subjectString searchingpor
dc.titleDC: a highly efficient and flexible exact pattern-matching algorithmpor
dc.typereport
dspace.entity.typePublication
oaire.citation.conferencePlaceBragapor
oaire.citation.titleDC: a highly efficient and flexible exact pattern-matching algorithmpor
person.familyNameDeusdado
person.givenNameSérgio
person.identifier.ciencia-id1D14-2CBC-54F2
person.identifier.orcid0000-0003-2638-2230
person.identifier.scopus-author-id15764598600
rcaap.rightsopenAccesspor
rcaap.typereportpor
relation.isAuthorOfPublication1363c41f-0861-40ea-a87a-4a24d9658f03
relation.isAuthorOfPublication.latestForDiscovery1363c41f-0861-40ea-a87a-4a24d9658f03

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