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From the popular tRNAleu-COX2 intergenic region to the mitogenome: insights from diverse honey bee populations of Europe and North Africa

2019Journal article Open access
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dc.contributor.authorHenriques, Dora
dc.contributor.authorChávez-Galarza, Julio
dc.contributor.authorQuaresma, Andreia
dc.contributor.authorNeves, Cátia J.
dc.contributor.authorLopes, Ana Rita
dc.contributor.authorCosta, Cecilia
dc.contributor.authorCosta, Filipe Oliveira
dc.contributor.authorRufino, José
dc.contributor.authorPinto, Maria A.
dc.date.accessioned2018-02-19T10:00:00Z
dc.date.accessioned2020-01-03T11:23:42Z
dc.date.available2018-01-19T10:00:00Z
dc.date.available2020-01-03T11:23:42Z
dc.date.issued2019
dc.description.abstractThe tRNAleu-COX2 intergenic region of the mitochondrial DNA has been used for assessing diversity in honey bee (Apis mellifera L.) populations worldwide. However, differential mutation rates in different partitions of the mitogenome may produce incongruent results. In this study, we sequenced 123 mitogenomes of 7 subspecies from lineages A, M, and C. This allowed generating a comprehensive dataset to investigate the phylogenetic and phylogeographic congruence among the mitogenome, individual genes, and the tRNAleu-COX2 region.We showed that the diversity patterns inferred fromthe tRNAleu-COX2 marker are not fully paralleled by those obtainedwith the mitogenome and the individual genes; while the three lineages are supported by these, the African sub-lineages and the haplotypes are not. Thus, conclusions drawn from the tRNAleu-COX2 region need to be taken with caution and this marker may not be appropriate to infer phylogenetic relationships between honey bee colonies.
dc.description.sponsorshipWe are deeply indebted to John C. Patton, Phillip San Miguel, Paul Parker, and Rick Westerman, University of Purdue, for resequencing the whole genomes, and to Pilar de la Rúa and to Carlo Amodeo for providing A. m. sahariensis and A. m. siciliana samples, respectively. Analyses were performed using computational resources at the Polytechnic Institute of Bragança. DH was supported by a PhD scholarship (SFRH/BD/ 84195/2012) from the Portuguese Science Foundation (FCT). This work was supported by FCT through the programs COMPETE/QREN/EU (PTDC/BIA-BEC/ 099640/2008) and the 2013-2014 BiodivERsA/ FACCE-JPI joint call for research proposals, with the national funders FCT (Portugal), CNRS (France), and MEC (Spain).
dc.description.versioninfo:eu-repo/semantics/publishedVersionen_EN
dc.identifier.citationHenriques, Dora; Chávez-Galarza, Júlio; Quaresma, Andreia; Neves, Cátia José; Lopes, Ana Rita; Costa, Cecília; Costa, Filipe O.; Rufino, José; Pinto, Maria Alice (2019). From the popular tRNAleu-COX2 intergenic region to the mitogenome: insights from diverse honey bee populations of Europe and North Africa. Apidologie. ISSN 0044-8435. 50:2, p. 215-229en_EN
dc.identifier.doi10.1007/s13592-019-00632-9en_EN
dc.identifier.issn0044-8435
dc.identifier.urihttp://hdl.handle.net/10198/19990
dc.language.isoeng
dc.peerreviewedyesen_EN
dc.subjectIberian honey beeen_EN
dc.subjectMitogenomeen_EN
dc.subjecttRNA -COX2 intergenic region leuen_EN
dc.titleFrom the popular tRNAleu-COX2 intergenic region to the mitogenome: insights from diverse honey bee populations of Europe and North Africaen_EN
dc.typejournal article
dspace.entity.typePublication
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/5876-PPCDTI/PTDC%2FBIA-BEC%2F099640%2F2008/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/SFRH/SFRH%2FBD%2F84195%2F2012/PT
oaire.fundingStream5876-PPCDTI
oaire.fundingStreamSFRH
person.familyNameHenriques
person.familyNameQuaresma
person.familyNameLopes
person.familyNameRufino
person.familyNamePinto
person.givenNameDora
person.givenNameAndreia
person.givenNameAna
person.givenNameJosé
person.givenNameMaria Alice
person.identifier.ciencia-id291F-986F-07DA
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person.identifier.ciencia-idF014-6835-054D
person.identifier.ciencia-idC414-F47F-6323
person.identifier.ciencia-idF814-A1D0-8318
person.identifier.orcid0000-0001-7530-682X
person.identifier.orcid0000-0002-8678-5800
person.identifier.orcid0000-0002-1888-2262
person.identifier.orcid0000-0002-1344-8264
person.identifier.orcid0000-0001-9663-8399
person.identifier.scopus-author-id55761737300
person.identifier.scopus-author-id57119742600
person.identifier.scopus-author-id55947199100
person.identifier.scopus-author-id8085507800
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsopenAccessen_EN
rcaap.typearticleen_EN
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