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Mitogenomic phylogeny and fossil-calibrated mutation rates for all F- And M-type mtDNA genes of the largest freshwater mussel family, the Unionidae (Bivalvia)

2021Journal article Open access
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dc.contributor.authorZieritz, Alexandra
dc.contributor.authorFroufe, Elsa
dc.contributor.authorBolotov, Ivan N.
dc.contributor.authorGonçalves, Duarte V.
dc.contributor.authorAldridge, David C.
dc.contributor.authorBogan, Arthur E.
dc.contributor.authorGan, Han Ming
dc.contributor.authorGomes-dos-Santos, André
dc.contributor.authorSousa, Ronaldo
dc.contributor.authorTeixeira, Amílcar
dc.contributor.authorVarandas, Simone
dc.contributor.authorZanatta, David
dc.contributor.authorLopes-Lima, Manuel
dc.date.accessioned2018-02-19T10:00:00Z
dc.date.accessioned2021-11-30T17:11:07Z
dc.date.available2018-01-19T10:00:00Z
dc.date.available2021-11-30T17:11:07Z
dc.date.issued2021
dc.description.abstractThe Unionidae represent an excellent model taxon for unravelling the drivers of freshwater diversity, but, phylogeographic studies on Southeast Asian taxa are hampered by lack of a comprehensive phylogeny and mutation rates for this fauna. We present complete female- (F) and male-type (M) mitogenomes of four genera of the Southeast Asian clade Contradentini+Rectidentini. We calculate substitution rates for the mitogenome, the 13 protein-coding genes, the two ribosomal units and three commonly used fragments (co1, nd1 and 16S) of both F- and M-mtDNA, based on a fossil-calibrated, mitogenomic phylogeny of the Unionidae. Phylogenetic analyses, including an M+F concatenated dataset, consistently recovers a monophyletic Gonideinae. Subfamily-level topology is congruent with that of a previous nuclear genomic study and with patterns in mitochondrial gene order, suggesting Unionidae F-type 2 as a synapomorphy of the Gonideinae. Our phylogeny indicates that the clades Contradentini+Rectidentini and Lamprotulini+Pseudodontini+Gonideini split in the early Cretaceous (~125 Mya), and that the crown group of Contradentini+Rectidentini originated in the late Cretaceous (~79 Mya). Most gonideine tribes originated during the early Palaeogene. Substitution rates were comparable to those previously published for F-type co1 and 16S for certain Unionidae and Margaritiferidae species (pairs).en_EN
dc.description.versioninfo:eu-repo/semantics/publishedVersionen_EN
dc.identifier.citationZieritz, Alexandra; Froufe, Elsa; Bolotov, Ivan; Gonçalves, Duarte V.; Aldridge, David C.; Bogan, Arthur E.; Gan, Han Ming; Gomes-Dos-Santos, André; Sousa, Ronaldo; Teixeira, Amilcar; Varandas, Simone; Zanatta, David; Lopes-Lima, Manuel (2021). Mitogenomic phylogeny and fossil-calibrated mutation rates for all F- And M-type mtDNA genes of the largest freshwater mussel family, the Unionidae (Bivalvia). Zoological Journal of the Linnean Society. ISSN 0024-4082. 193:3, p. 1088-1107en_EN
dc.identifier.doi10.1093/zoolinnean/zlaa153en_EN
dc.identifier.issn0024-4082
dc.identifier.urihttp://hdl.handle.net/10198/21006
dc.language.isoeng
dc.peerreviewedyesen_EN
dc.relationInterdisciplinary Centre of Marine and Environmental Research
dc.relationInterdisciplinary Centre of Marine and Environmental Research
dc.relationInferring phylogeny, demography and adaptive evolution in Margaritiferidae from High-throughput Sequencing data
dc.relationCentre for the Research and Technology of Agro-Environmental and Biological Sciences
dc.subjectEvolutionary biogeographyen_EN
dc.subjectMitochondrial DNAen_EN
dc.subjectPalaeogeographyen_EN
dc.subjectSelectionen_EN
dc.subjectSubstitution rateen_EN
dc.subjectTropical biodiversityen_EN
dc.titleMitogenomic phylogeny and fossil-calibrated mutation rates for all F- And M-type mtDNA genes of the largest freshwater mussel family, the Unionidae (Bivalvia)en_EN
dc.typejournal article
dspace.entity.typePublication
oaire.awardTitleInterdisciplinary Centre of Marine and Environmental Research
oaire.awardTitleInterdisciplinary Centre of Marine and Environmental Research
oaire.awardTitleInferring phylogeny, demography and adaptive evolution in Margaritiferidae from High-throughput Sequencing data
oaire.awardTitleCentre for the Research and Technology of Agro-Environmental and Biological Sciences
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F04423%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDP%2F04423%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/POR_NORTE/SFRH%2FBD%2F137935%2F2018/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UID%2FAGR%2F04033%2F2019/PT
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStream6817 - DCRRNI ID
oaire.fundingStreamPOR_NORTE
oaire.fundingStream6817 - DCRRNI ID
person.familyNameTeixeira
person.givenNameAmilcar
person.identifier2153193
person.identifier.ciencia-id9510-3CF3-0393
person.identifier.orcid0000-0001-5336-1174
person.identifier.scopus-author-id7202385393
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
project.funder.nameFundação para a Ciência e a Tecnologia
rcaap.rightsopenAccessen_EN
rcaap.typearticleen_EN
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