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Microbiome and Microbiota Within Wineries: A Review

2025Review Open access
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datacite.subject.fosCiências Agrárias::Agricultura, Silvicultura e Pescas
datacite.subject.sdg03:Saúde de Qualidade
dc.contributor.authorAires, Cristina
dc.contributor.authorMaioto, Rita
dc.contributor.authorInês, António
dc.contributor.authorDias, Albino Alves
dc.contributor.authorRodrigues, Paula
dc.contributor.authorEgas, Conceição
dc.contributor.authorSampaio, Ana
dc.date.accessioned2025-06-02T11:10:50Z
dc.date.available2025-06-02T11:10:50Z
dc.date.issued2025
dc.description.abstractThe main goal of this work is to review the winery’s microbiota, from the grape to the winery’s microbial niches (fermentation tanks, surfaces, air), and their risks to wine and human health. The impact of climate change on the winery microbiome and related challenges are also discussed. Microbial diversity in wineries depends on several factors, such as the grape variety and its ripeness, temperature, relative humidity and the diverse activities of the winemaking process. Winery surfaces and equipment allow the establishment of a microbial community that can impact wine quality, the health of winery workers and visitors and even wine consumers. In the context of climate change, changes in the sugar content, phenolic compounds and the profile of hexoses and amino acids are already evident. These changes interfere with the fermentation microbiota and the quality of the wines, which are more alcoholic and less acidic. Furthermore, periods of drought or heavy rain favor species associated with berry diseases, including some capable of producing mycotoxins or harmful biogenic amines. In order to understand the impact of these changes on microbial communities, the use of various techniques will be discussed, such as flow cytometry, fluorescence in situ hybridization (FISH), quantitative polymerase chain reaction (qPCR) and metagenomic methods.eng
dc.description.sponsorshipThis research was funded by Vine&Wine Portugal Project, co-financed by “PRR—Plano de Recuperação e Resiliência, Agendas Mobilizadoras para Inovação Empresarial” and the European Next Generation EU Funds within the scope of the Mobilizing Agendas for Reindustrialization, C644866286-00000011. C.A. and R.M. are grateful to Vine&Wine for their PhD grants (BI/UTAD/81/2022 and BI/UTAD/80/2022). We are also grateful to FCT/MCTES, under the projects UI/04033 and LA/P/0126/2020 (https://doi.org/10.54499/LA/P/0126/2020), CQ-Vila Real (UIDB/00616/2020), CIMO (UIDB/00690/2020), SusTEC (LAP/0007/2020;doi:10.54499/LA/P/0007/2020), UIDB/04539/2020, UIDP/04539/2020 and LA/P/0058/2020.
dc.identifier.citationAires, Cristina; Maioto, Rita; Inês, António; Dias, Albino Alves; Rodrigues, Paula; Egas, Conceição; Sampaio, Ana. (2025). Microbiome and Microbiota Within Wineries: A Review. Microorganisms. ISSN 2076-2607. 13:3, p. 1-34
dc.identifier.doi10.3390/microorganisms13030538
dc.identifier.issn2076-2607
dc.identifier.urihttp://hdl.handle.net/10198/34536
dc.language.isoeng
dc.peerreviewedyes
dc.publisherMDPI
dc.relationInstitute for innovation, capacity building and sustainability of agri-food production
dc.relationChemistry Center - Vila Real
dc.relationMountain Research Center
dc.relationAssociate Laboratory for Sustainability and Tecnology in Mountain Regions
dc.relationCenter for Innovative Biomedicine and Biotechnology
dc.relationCenter for Innovative Biomedicine and Biotechnology
dc.relation.ispartofMicroorganisms
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.subjectBacteria
dc.subjectYeast
dc.subjectFungi
dc.subjectSurfaces
dc.subjectVinification
dc.subjectRisks
dc.subjectClimate change
dc.titleMicrobiome and Microbiota Within Wineries: A Revieweng
dc.typereview
dspace.entity.typePublication
oaire.awardTitleInstitute for innovation, capacity building and sustainability of agri-food production
oaire.awardTitleChemistry Center - Vila Real
oaire.awardTitleMountain Research Center
oaire.awardTitleAssociate Laboratory for Sustainability and Tecnology in Mountain Regions
oaire.awardTitleCenter for Innovative Biomedicine and Biotechnology
oaire.awardTitleCenter for Innovative Biomedicine and Biotechnology
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/LA%2FP%2F0126%2F2020/PT
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oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDB%2F04539%2F2020/PT
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/UIDP%2F04539%2F2020/PT
oaire.citation.endPage34
oaire.citation.issue3
oaire.citation.startPage1
oaire.citation.titleMicroorganisms
oaire.citation.volume13
oaire.fundingStream6817 - DCRRNI ID
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oaire.versionhttp://purl.org/coar/version/c_970fb48d4fbd8a85
person.familyNameRodrigues
person.givenNamePaula
person.identifier.ciencia-id2312-18AE-DA42
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