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Contrasting whole-genome diversity patterns and adaptation in honeybees from two southern European glacial refugia

datacite.subject.fosCiências Naturais::Ciências Biológicas
datacite.subject.fosCiências Agrárias::Agricultura, Silvicultura e Pescas
datacite.subject.sdg15:Proteger a Vida Terrestre
datacite.subject.sdg04:Educação de Qualidade
dc.contributor.authorYadró Garcia, Carlos A.
dc.contributor.authorHenriques, Dora
dc.contributor.authorCilia, Giovanni
dc.contributor.authorRufino, José
dc.contributor.authorVella, Cristina
dc.contributor.authorAglagane, Abdessamad
dc.contributor.authorSagastume, Soledad
dc.contributor.authorZammit-Mangion, Marion
dc.contributor.authorMartín-Hernández, Raquel
dc.contributor.authorNanetti, Antonio
dc.contributor.authorPinto, M. Alice
dc.date.accessioned2026-02-10T16:12:32Z
dc.date.available2026-02-10T16:12:32Z
dc.date.issued2026
dc.description.abstractHuman-driven environmental change makes understanding genetic variation essential for protecting keystone species such as the honeybee, Apis mellifera. We compared whole-genome mitonuclear variation in subspecies inhabiting the Iberian and Italian Peninsulas, which have been shaped by distinct glacial histories and modern beekeeping pressures. Italian honeybees showed a stronger anthropogenic imprint, driven largely by recent human-mediated gene flow. Both subspecies showed mitonuclear asymmetry, approximate south-to-northeast clinal pattern, evidence of ancient or recent admixture with other subspecies and lineages, and genomic signatures of a 20th-century bottleneck. African ancestry was present both, though ancient and predominantly mitochondrial in Iberia, but recent and predominantly nuclear Italy. Italian honeybees also had persistently lower historical effective population sizes, lower nucleotide versity, and higher kinship. Shared and subspecies-specific enriched genes suggest both convergent and unique adaptive responses. These results highlight complex evolutionary dynamics and the significant netic impact of modern beekeeping.eng
dc.description.sponsorshipThe authors are grateful to the many beekeepers who provided samples and metadata from their apiaries. Thanks are also due to Antonio Pajuelo for the information on the beekeeping history in Spain, as well as Thibault Leroy and Pierre Faux for their valuable insights on early versions of the article. We are also grateful to Enrique Santiago Rubio for his valuable insights on GONE calculations. C.A.Y.G. was funded by Fundação para a Ciência e a Tecnologia (FCT) through the individual research grant 2021.06948.BD (https://doi.org/10.54499/2021.06948.BD). This research was funded by the project MEDIBEES - Monitoring the Mediterranean Honey Bee Subspecies and their Resilience to Climate Change for the Improvement of Sustainable AgroEcosystems. MEDIBEES is part of the PRIMA program supported by the European Union. This research was also supported by national funds through FCT/MCTES (PIDDAC): CIMO UID/00690/2025 (https://doi.org/10.54499/UID/00690/2025) and UID/PRR/00690/2025 (https://doi.org/10.54499/UID/PRR/00690/2025); SusTEC, LA/P/0007/2020 (https://doi.org/10.54499/LA/P/0007/2020).
dc.identifier.citationGarcia, Carlos A. Yadro; Henriques, Dora; Cilia, Giovanni; Rufino, Jose; Vella, Cristina; Aglagane, Abdessamad; Sagastume, Soledad; Zammit-Mangion, Marion; Martin-Hernandez, Raquel; Nanetti, Antonio; Pinto, M. Alice (2026). Contrasting whole-genome diversity patterns and adaptation in honeybees from two southern European glacial refugia. Iscience. ISSN 2589-0042. 29:1, p. 1-22
dc.identifier.doi10.1016/j.isci.2025.114497
dc.identifier.issn2589-0042
dc.identifier.urihttp://hdl.handle.net/10198/35706
dc.language.isoeng
dc.peerreviewedyes
dc.publisherElsevier
dc.relationAssociate Laboratory for Sustainability and Tecnology in Mountain Regions
dc.relation.ispartofiScience
dc.rights.urihttp://creativecommons.org/licenses/by-nc/4.0/
dc.subjectEntomology
dc.subjectEvolutionary biology
dc.subjectZoology
dc.titleContrasting whole-genome diversity patterns and adaptation in honeybees from two southern European glacial refugiaeng
dc.typejournal article
dspace.entity.typePublication
oaire.awardNumberLA/P/0007/2020
oaire.awardTitleAssociate Laboratory for Sustainability and Tecnology in Mountain Regions
oaire.awardURIinfo:eu-repo/grantAgreement/FCT/6817 - DCRRNI ID/LA%2FP%2F0007%2F2020/PT
oaire.citation.endPage22
oaire.citation.issue1
oaire.citation.startPage1
oaire.citation.titleIscience
oaire.citation.volume29
oaire.fundingStream6817 - DCRRNI ID
oaire.versionhttp://purl.org/coar/version/c_970fb48d4fbd8a85
person.familyNameYadró Garcia
person.familyNameHenriques
person.familyNameRufino
person.familyNamePinto
person.givenNameCarlos A.
person.givenNameDora
person.givenNameJosé
person.givenNameM. Alice
person.identifier.ciencia-idF71F-B08E-EC39
person.identifier.ciencia-id291F-986F-07DA
person.identifier.ciencia-idC414-F47F-6323
person.identifier.ciencia-idF814-A1D0-8318
person.identifier.orcid0000-0002-6916-3647
person.identifier.orcid0000-0001-7530-682X
person.identifier.orcid0000-0002-1344-8264
person.identifier.orcid0000-0001-9663-8399
person.identifier.scopus-author-id55761737300
person.identifier.scopus-author-id55947199100
person.identifier.scopus-author-id8085507800
project.funder.identifierhttp://doi.org/10.13039/501100001871
project.funder.nameFundação para a Ciência e a Tecnologia
relation.isAuthorOfPublication59212a6c-fc6a-45fd-b37a-51e90926c9e3
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